ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

1281

Symbol:

COL3A1

Full Name:

collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)

Alias:

EDS4A|FLJ34534

Organism:

Homo sapiens (Human)

Chromosome:

Genetic Location:

2q31

Physical Location:

189547343-189585716 on NC_000002.10

Gene Type:

protein-coding

Orthologs:

This gene has no orthologs in other dataset(s).

Gene in Ethanol Study Datasets

Gene Information

Original ID1:

COL3A1

Dataset Information

Name:		Literature Search
Method:		Literature search
Summary:		We search all human protein coding gene names and the keywords Alcohol or Ethanol or Alcoholism in the title or abstract of all PUBMED publications. For those gene name less than 3 characters or search result hits more than 100, we use the full name to search again and manually check the results to reduce false positive.

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_000090.3	NP_000081.1	NC_000002.10 range: 189547343..189585716

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0005615	extracellular space	Cellular Component	NAS (9036918)
GO:0005737	cytoplasm	Cellular Component	IEA
GO:0005615	extracellular space	Cellular Component	IDA (7487954)
GO:0005576	extracellular region	Cellular Component	IEA
GO:0005581	collagen	Cellular Component	IEA
GO:0005586	collagen type III	Cellular Component	IMP (7487954)
GO:0005586	collagen type III	Cellular Component	NAS (1672129)
GO:0005178	integrin binding	Molecular Function	IMP (9573018)
GO:0005515	protein binding	Molecular Function	IPI (2839553\|16754721\|16912226)
GO:0005201	extracellular matrix structural constituent	Molecular Function	IMP (7487954\|9036918)
GO:0005178	integrin binding	Molecular Function	NAS (14970208)
GO:0030199	collagen fibril organization	Biological Process	NAS (1672129)
GO:0032964	collagen biosynthetic process	Biological Process	IMP (2981879\|7546986\|9036918)
GO:0032964	collagen biosynthetic process	Biological Process	TAS (6295694)
GO:0034097	response to cytokine stimulus	Biological Process	IDA (9076960\|16360482)
GO:0042060	wound healing	Biological Process	IDA (1466622)
GO:0042060	wound healing	Biological Process	NAS (14736764)
GO:0043588	skin development	Biological Process	IMP (9036918)
GO:0030199	collagen fibril organization	Biological Process	IMP (7546986\|9036918)
GO:0030168	platelet activation	Biological Process	NAS (9573018)
GO:0018149	peptide cross-linking	Biological Process	IDA (16754721)
GO:0009314	response to radiation	Biological Process	IDA (14736764)
GO:0007507	heart development	Biological Process	IMP (7546986)
GO:0007229	integrin-mediated signaling pathway	Biological Process	IMP (14970208)
GO:0007179	transforming growth factor beta receptor signaling pathway	Biological Process	IDA (16360482)
GO:0007160	cell-matrix adhesion	Biological Process	IDA (16912226)
GO:0006817	phosphate transport	Biological Process	IEA
GO:0050777	negative regulation of immune response	Biological Process	IMP (16754721)