ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

18504

Symbol:

Pax2

Full Name:

paired box gene 2

Alias:

Pax-2

Organism:

Mus musculus (Mouse)

Chromosome:

Genetic Location:

19 C3|19 43.0 cM

Physical Location:

44831883-44910516 on NC_000085.5

Gene Type:

protein-coding

Human Ortholog:

GeneID: 5076 Symbol (Name): PAX2 (paired box 2)

Ortholog Status:

The human GeneID 5076 is also in human dataset(s).

Gene in Ethanol Study Datasets

QTL Information

QTL	Phenotype	Chr	Peak (cM)	LOD	P Value	Range	Status	QTL Link
Calw2/Alcdp2	Chronic Alcohol Withdrawal	19	47	36.5-ter (cM)	5.3	6.00E-07	Significant	PARC

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_011037.3	NP_035167.3	NC_000085.5 range: 44831883..44910516

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0005634	nucleus	Cellular Component	IDA (10536059)
GO:0005667	transcription factor complex	Cellular Component	TAS (10197584)
GO:0003700	transcription factor activity	Molecular Function	TAS (10197584)
GO:0003677	DNA binding	Molecular Function	IDA (12756174)
GO:0005515	protein binding	Molecular Function	IPI (10908331)
GO:0043010	camera-type eye development	Biological Process	IMP (12756174)
GO:0045944	positive regulation of transcription from RNA polymerase II promoter	Biological Process	IDA (12200151)
GO:0045449	regulation of transcription	Biological Process	IEA
GO:0043069	negative regulation of programmed cell death	Biological Process	IMP (16672320)
GO:0006350	transcription	Biological Process	IEA
GO:0006355	regulation of transcription, DNA-dependent	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0043067	regulation of programmed cell death	Biological Process	IGI (16672320)
GO:0042472	inner ear morphogenesis	Biological Process	IMP (15242798)
GO:0030154	cell differentiation	Biological Process	IEA
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	Biological Process	IGI (15905411)
GO:0001655	urogenital system development	Biological Process	IMP (8575306)
GO:0001656	metanephros development	Biological Process	IGI (12435636)
GO:0001656	metanephros development	Biological Process	IMP (8575306)
GO:0001657	ureteric bud development	Biological Process	IGI (16018995)
GO:0001658	ureteric bud branching	Biological Process	IGI (16672320)
GO:0001658	ureteric bud branching	Biological Process	IMP (16672320)
GO:0001709	cell fate determination	Biological Process	IMP (12756174)
GO:0001822	kidney development	Biological Process	IGI (16672320)
GO:0001822	kidney development	Biological Process	IMP (16672320)
GO:0001823	mesonephros development	Biological Process	IMP (8575306)
GO:0060231	mesenchymal to epithelial transition	Biological Process	IMP (8575306)