ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

Pscd2

Full Name:

pleckstrin homology, Sec7 and coiled-coil domains 2

Alias:

CLM2

Organism:

Mus musculus (Mouse)

Chromosome:

Genetic Location:

7 B4

Physical Location:

53062006-53069655 on NC_000073.5, complement

Gene Type:

protein-coding

Human Ortholog:

GeneID: 9266 Symbol (Name): PSCD2 (pleckstrin homology, Sec7 and coiled-coil domains 2 (cytohesin-2))

Ortholog Status:

The human GeneID 9266 is not in current human dataset.

Gene in Ethanol Study Datasets

Gene Information

Original ID1:		Pscd2
Fold Change:		0.79
Note:		Significantly regulated by ethanol in cortical neurons

Gene Information

Original ID1:		Pscd2
Fold Change:		0.8
Note:		Significantly regulated in cortical neurons treated with both ethanol and nicotine

Dataset Information

Name:		17295719
Method:		Microarray
Tissue:		Cultured fetal mouse cortical neurons
Phenotype:		Ethanol response
Publication:		Wang et al. Alcohol Clin Exp Res. (2007) Regulation of platelet-derived growth factor signaling pathway by ethanol, nicotine, or both in mouse cortical neurons. PubMed
Summary:		By using cultured fetal mouse cortical neurons as a model system, we sought to identify genes and pathways that are modulated in the cells by ethanol, nicotine, or both. METHODS: Primary cerebral cortical cultures were prepared from the brains of 14-day-old C57BL/6 mouse fetuses and exposed to ethanol (75 mM), nicotine (0.1 mM), or both for 5 consecutive days. A homeostatic pathway-focused microarray consisting of 638 sequence-verified genes was used to measure transcripts differentially regulated by ethanol, nicotine, or both in 5 drug-treated cortical neuron samples and 5 control samples. We identified 65, 111, and 81 significantly regulated genes in the ethanol, nicotine, and ethanol/nicotine-treated neurons, respectively. A gene was considered to be significantly regulated if (1) the fold change was 20% greater or less compared with the controls and (2) the difference was p<0.05 by Student's t-test.

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_011181.3	NP_035311.1	NC_000073.5 range: 53062006..53069655, complement

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0005622	intracellular	Cellular Component	IEA
GO:0005737	cytoplasm	Cellular Component	ISO
GO:0005886	plasma membrane	Cellular Component	ISO
GO:0005085	guanyl-nucleotide exchange factor activity	Molecular Function	RCA (12466851)
GO:0005086	ARF guanyl-nucleotide exchange factor activity	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IPI (16415858)
GO:0030155	regulation of cell adhesion	Biological Process	ISO
GO:0032012	regulation of ARF protein signal transduction	Biological Process	IEA