ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

Psmc5

Full Name:

protease (prosome, macropain) 26S subunit, ATPase 5

Alias:

mSUG1

Organism:

Mus musculus (Mouse)

Chromosome:

Genetic Location:

11 E1

Physical Location:

106117498-106124425 on NC_000077.5

Gene Type:

protein-coding

Human Ortholog:

GeneID: 5705 Symbol (Name): PSMC5 (proteasome (prosome, macropain) 26S subunit, ATPase, 5)

Ortholog Status:

The human GeneID 5705 is not in current human dataset.

Gene in Ethanol Study Datasets

Gene Information

Original ID1:		Psmc5
Fold Change:		1.33
Note:		Significantly regulated by ethanol in cortical neurons

Dataset Information

Name:		17295719
Method:		Microarray
Tissue:		Cultured fetal mouse cortical neurons
Phenotype:		Ethanol response
Publication:		Wang et al. Alcohol Clin Exp Res. (2007) Regulation of platelet-derived growth factor signaling pathway by ethanol, nicotine, or both in mouse cortical neurons. PubMed
Summary:		By using cultured fetal mouse cortical neurons as a model system, we sought to identify genes and pathways that are modulated in the cells by ethanol, nicotine, or both. METHODS: Primary cerebral cortical cultures were prepared from the brains of 14-day-old C57BL/6 mouse fetuses and exposed to ethanol (75 mM), nicotine (0.1 mM), or both for 5 consecutive days. A homeostatic pathway-focused microarray consisting of 638 sequence-verified genes was used to measure transcripts differentially regulated by ethanol, nicotine, or both in 5 drug-treated cortical neuron samples and 5 control samples. We identified 65, 111, and 81 significantly regulated genes in the ethanol, nicotine, and ethanol/nicotine-treated neurons, respectively. A gene was considered to be significantly regulated if (1) the fold change was 20% greater or less compared with the controls and (2) the difference was p<0.05 by Student's t-test.

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_008950.1	NP_032976.1	NC_000077.5 range: 106117498..106124425

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0043234	protein complex	Cellular Component	IEA
GO:0005829	cytosol	Cellular Component	IEA
GO:0005737	cytoplasm	Cellular Component	IEA
GO:0005675	holo TFIIH complex	Cellular Component	ISS (9173976)
GO:0005634	nucleus	Cellular Component	IEA
GO:0000502	proteasome complex	Cellular Component	RCA (12466851)
GO:0005524	ATP binding	Molecular Function	IEA
GO:0017111	nucleoside-triphosphatase activity	Molecular Function	IEA
GO:0016887	ATPase activity	Molecular Function	RCA (12466851)
GO:0016787	hydrolase activity	Molecular Function	IEA
GO:0008134	transcription factor binding	Molecular Function	ISS (9173976)
GO:0003712	transcription cofactor activity	Molecular Function	RCA (12466851)
GO:0005102	receptor binding	Molecular Function	IPI (8598193)
GO:0005515	protein binding	Molecular Function	IPI (9173976)
GO:0000166	nucleotide binding	Molecular Function	RCA (12466851)
GO:0006366	transcription from RNA polymerase II promoter	Biological Process	RCA (12466851)
GO:0016481	negative regulation of transcription	Biological Process	IDA (9173976)
GO:0030163	protein catabolic process	Biological Process	IEA