ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

Usp9x

Full Name:

ubiquitin specific peptidase 9, X chromosome

Alias:

5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl

Organism:

Mus musculus (Mouse)

Chromosome:

Genetic Location:

X A1.1|X 5.5 cM

Physical Location:

12648623-12750453 on NC_000086.6

Gene Type:

protein-coding

Human Ortholog:

GeneID: 8239 Symbol (Name): USP9X (ubiquitin specific peptidase 9, X-linked)

Ortholog Status:

The human GeneID 8239 is not in current human dataset.

Gene in Ethanol Study Datasets

Gene Information

Original ID1:		Usp9x
Fold Change:		1.79
Note:		Significantly regulated by ethanol in cortical neurons

Gene Information

Original ID1:		Usp9x
Fold Change:		1.58
Note:		Significantly regulated in cortical neurons treated with both ethanol and nicotine

Dataset Information

Name:		17295719
Method:		Microarray
Tissue:		Cultured fetal mouse cortical neurons
Phenotype:		Ethanol response
Publication:		Wang et al. Alcohol Clin Exp Res. (2007) Regulation of platelet-derived growth factor signaling pathway by ethanol, nicotine, or both in mouse cortical neurons. PubMed
Summary:		By using cultured fetal mouse cortical neurons as a model system, we sought to identify genes and pathways that are modulated in the cells by ethanol, nicotine, or both. METHODS: Primary cerebral cortical cultures were prepared from the brains of 14-day-old C57BL/6 mouse fetuses and exposed to ethanol (75 mM), nicotine (0.1 mM), or both for 5 consecutive days. A homeostatic pathway-focused microarray consisting of 638 sequence-verified genes was used to measure transcripts differentially regulated by ethanol, nicotine, or both in 5 drug-treated cortical neuron samples and 5 control samples. We identified 65, 111, and 81 significantly regulated genes in the ethanol, nicotine, and ethanol/nicotine-treated neurons, respectively. A gene was considered to be significantly regulated if (1) the fold change was 20% greater or less compared with the controls and (2) the difference was p<0.05 by Student's t-test.

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_009481.2	NP_033507.2	NC_000086.6 range: 12648623..12750453

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0005737	cytoplasm	Cellular Component	IDA (15509704)
GO:0004221	ubiquitin thiolesterase activity	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IPI (17500595)
GO:0008233	peptidase activity	Molecular Function	IEA
GO:0008234	cysteine-type peptidase activity	Molecular Function	IEA
GO:0016787	hydrolase activity	Molecular Function	IEA
GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process	IEA
GO:0006512	ubiquitin cycle	Biological Process	IEA