ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

Vax1

Full Name:

ventral anterior homeobox containing gene 1

Alias:

MGC130490

Organism:

Mus musculus (Mouse)

Chromosome:

Genetic Location:

19 D3|19 53.5 cM

Physical Location:

59240676-59244518 on NC_000085.5, complement

Gene Type:

protein-coding

Human Ortholog:

GeneID: 11023 Symbol (Name): VAX1 (ventral anterior homeobox 1)

Ortholog Status:

The human GeneID 11023 is not in current human dataset.

Gene in Ethanol Study Datasets

QTL Information

QTL	Phenotype	Chr	Peak (cM)	LOD	P Value	Range	Status	QTL Link
Calw2/Alcdp2	Chronic Alcohol Withdrawal	19	47	36.5-ter (cM)	5.3	6.00E-07	Significant	PARC

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_009501.1	NP_033527.1	NC_000085.5 range: 59240676..59244518, complement

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0005634	nucleus	Cellular Component	IDA (17043310)
GO:0043565	sequence-specific DNA binding	Molecular Function	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0003700	transcription factor activity	Molecular Function	IMP (10601035)
GO:0031490	chromatin DNA binding	Molecular Function	IDA (15905411)
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	Biological Process	IGI (15905411)
GO:0007420	brain development	Biological Process	IMP (10601035\|10601036)
GO:0030154	cell differentiation	Biological Process	IMP (15590934)
GO:0043010	camera-type eye development	Biological Process	IGI (15905411)
GO:0007417	central nervous system development	Biological Process	IMP (10601035\|10601036)
GO:0007411	axon guidance	Biological Process	IMP (10601035)
GO:0007406	negative regulation of neuroblast proliferation	Biological Process	IMP (15590934)
GO:0007399	nervous system development	Biological Process	IMP (15280216)
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0006355	regulation of transcription, DNA-dependent	Biological Process	IEA
GO:0006350	transcription	Biological Process	IEA
GO:0001764	neuron migration	Biological Process	IMP (15280216\|15590934)
GO:0045449	regulation of transcription	Biological Process	IEA