ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

Cib1

Full Name:

calcium and integrin binding 1 (calmyrin)

Alias:

Cibkip|Kip|Prkdcip

Organism:

Mus musculus (Mouse)

Chromosome:

Genetic Location:

7 D3

Physical Location:

87372045-87377501 on NC_000073.5, complement

Gene Type:

protein-coding

Human Ortholog:

GeneID: 10519 Symbol (Name): CIB1 (calcium and integrin binding 1 (calmyrin))

Ortholog Status:

The human GeneID 10519 is not in current human dataset.

Gene in Ethanol Study Datasets

Gene Information

Original ID1:		Cib1
Fold Change:		0.76
Note:		Significantly regulated in cortical neurons treated with both ethanol and nicotine

Dataset Information

Name:		17295719
Method:		Microarray
Tissue:		Cultured fetal mouse cortical neurons
Phenotype:		Ethanol response
Publication:		Wang et al. Alcohol Clin Exp Res. (2007) Regulation of platelet-derived growth factor signaling pathway by ethanol, nicotine, or both in mouse cortical neurons. PubMed
Summary:		By using cultured fetal mouse cortical neurons as a model system, we sought to identify genes and pathways that are modulated in the cells by ethanol, nicotine, or both. METHODS: Primary cerebral cortical cultures were prepared from the brains of 14-day-old C57BL/6 mouse fetuses and exposed to ethanol (75 mM), nicotine (0.1 mM), or both for 5 consecutive days. A homeostatic pathway-focused microarray consisting of 638 sequence-verified genes was used to measure transcripts differentially regulated by ethanol, nicotine, or both in 5 drug-treated cortical neuron samples and 5 control samples. We identified 65, 111, and 81 significantly regulated genes in the ethanol, nicotine, and ethanol/nicotine-treated neurons, respectively. A gene was considered to be significantly regulated if (1) the fold change was 20% greater or less compared with the controls and (2) the difference was p<0.05 by Student's t-test.

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_011870.4	NP_036000.1	NC_000073.5 range: 87372045..87377501, complement

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0016020	membrane	Cellular Component	IDA (10366599)
GO:0005654	nucleoplasm	Cellular Component	ISS (10366599)
GO:0005737	cytoplasm	Cellular Component	IMP (10366599)
GO:0005783	endoplasmic reticulum	Cellular Component	ISS (10366599)
GO:0005509	calcium ion binding	Molecular Function	ISS (15475008)
GO:0016301	kinase activity	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	ISS (10366599\|12011095\|15685448)
GO:0006974	response to DNA damage stimulus	Biological Process	ISS (12011095)
GO:0007229	integrin-mediated signaling pathway	Biological Process	IEA
GO:0006915	apoptosis	Biological Process	ISS (10366599)