ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

Nptx1

Full Name:

neuronal pentraxin 1

Organism:

Rattus norvegicus (Rat)

Chromosome:

Genetic Location:

10q32.3

Physical Location:

108918660-108927617 on NC_005109.2, complement

Gene Type:

protein-coding

Human Ortholog:

GeneID: 4884 Symbol (Name): NPTX1 (neuronal pentraxin I)

Ortholog Status:

The human GeneID 4884 is also in human dataset(s).

Gene in Ethanol Study Datasets

Gene Information

Dataset Information

Name:		17517326
Method:		Microarray
Tissue:		Nucleus accumbens, amygdala, frontal cortex, caudate-putamen, and hippocampus
Phenotype:		Alcohol-preferring, alcohol-nonpreferring
Publication:		Kimpel et al. Alcohol. (2007) Functional gene expression differences between inbred alcohol-preferring and -non-preferring rats in five brain regions. PubMed
Summary:		The objective of this study was to determine if there are innate differences in gene expression in selected CNS regions between inbred alcohol-preferring (iP) and -non-preferring (iNP) rats. Gene expression was determined in the nucleus accumbens (ACB), amygdala (AMYG), frontal cortex (FC), caudate-putamen (CPU), and hippocampus (HIPP) of alcohol-naive adult male iP and iNP rats, using Affymetrix Rat Genome U34A microarrays (n = 6/strain). Using Linear Modeling for Microarray Analysis with a false discovery rate threshold of 0.1, there were 16 genes with differential expression in the ACB, 54 in the AMYG, 8 in the FC, 24 in the CPU, and 21 in the HIPP. All the fold change are iP vs. iNP fold change.

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_153735.2	NP_714957.1	NC_005109.2 range: 108918660..108927617, complement

Gene Ontology (GO) Annotation