ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

Phf17

Full Name:

PHD finger protein 17

Alias:

AU041499|D530048A03Rik|Jade1|mKIAA1807

Organism:

Mus musculus (Mouse)

Chromosome:

Genetic Location:

3 B

Physical Location:

41385116-41420778 on NC_000069.5

Gene Type:

protein-coding

Human Ortholog:

GeneID: 79960 Symbol (Name): PHF17 (PHD finger protein 17)

Ortholog Status:

The human GeneID 79960 is not in current human dataset.

Gene in Ethanol Study Datasets

Gene Information

Original ID1:

Phf17

Dataset Information

Name:		16618939
Method:		Microarray
Tissue:		Whole brain
Phenotype:		Alcohol preference
Publication:		Mulligan et al. Proc Natl Acad Sci U S A. (2006) Toward understanding the genetics of alcohol drinking through transcriptome meta-analysis. PubMed
Summary:		Microarray analyses of brain gene expression in three selected lines, and six isogenic strains of mice known to differ markedly in voluntary alcohol consumption provided >4.5 million data points for a meta-analysis. A total of 107 arrays were obtained and arranged into six experimental data sets, allowing the identification of 3,800 unique genes significantly and consistently changed between all models of high or low amounts of alcohol consumption. Here we select the 75 genes with the largest effect size (\|d\|) and lowest Q values.

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_172303.3	NP_758507.3	NC_000069.5 range: 41385116..41420778

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0005634	nucleus	Cellular Component	IEA
GO:0005737	cytoplasm	Cellular Component	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0008270	zinc ion binding	Molecular Function	IEA
GO:0046872	metal ion binding	Molecular Function	IEA
GO:0006350	transcription	Biological Process	IEA
GO:0006355	regulation of transcription, DNA-dependent	Biological Process	IEA
GO:0006915	apoptosis	Biological Process	IEA