ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

MMP13

Full Name:

matrix metallopeptidase 13 (collagenase 3)

Alias:

CLG3

Organism:

Homo sapiens (Human)

Chromosome:

11

Genetic Location:

11q22.3

Physical Location:

102318933-102331671 on NC_000011.8, complement

Gene Type:

protein-coding

Orthologs:

This gene has no orthologs in other dataset(s).

Gene in Ethanol Study Datasets

Gene Information

Original ID1:

MMP13

Dataset Information

Name:		Literature Search
Method:		Literature search
Summary:		We search all human protein coding gene names and the keywords Alcohol or Ethanol or Alcoholism in the title or abstract of all PUBMED publications. For those gene name less than 3 characters or search result hits more than 100, we use the full name to search again and manually check the results to reduce false positive.

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_002427.2	NP_002418.1	NC_000011.8 range: 102318933..102331671, complement

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0005576	extracellular region	Cellular Component	IEA
GO:0005578	proteinaceous extracellular matrix	Cellular Component	IEA
GO:0005615	extracellular space	Cellular Component	TAS (8207000)
GO:0004222	metalloendopeptidase activity	Molecular Function	IEA
GO:0005509	calcium ion binding	Molecular Function	IEA
GO:0008270	zinc ion binding	Molecular Function	TAS (8207000)
GO:0008270	zinc ion binding	Molecular Function	IEA
GO:0008133	collagenase activity	Molecular Function	TAS (8609233)
GO:0008152	metabolic process	Biological Process	IEA
GO:0006508	proteolysis	Biological Process	TAS (8207000)
GO:0006508	proteolysis	Biological Process	IEA
GO:0030574	collagen catabolic process	Biological Process	IEA

Other Database Cross Links

NCBI Entrez Gene:

HGNC:

Ensembl:

ENSG00000137745

MIM:

HPRD:

HuGE Navigator:

dbSNP:

GeneCard:

AceView: