ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

Tbc1d9

Full Name:

TBC1 domain family, member 9

Alias:

4933431N12Rik|AI847101|AW490653|C76116

Organism:

Mus musculus (Mouse)

Chromosome:

Genetic Location:

8 C3

Physical Location:

85689250-85796320 on NC_000074.5

Gene Type:

protein-coding

Human Ortholog:

GeneID: 23158 Symbol (Name): TBC1D9 (TBC1 domain family, member 9 (with GRAM domain))

Ortholog Status:

The human GeneID 23158 is not in current human dataset.

Gene in Ethanol Study Datasets

Gene Information

Original ID1:

4933431N12Rik

Dataset Information

Name:		16618939
Method:		Microarray
Tissue:		Whole brain
Phenotype:		Alcohol preference
Publication:		Mulligan et al. Proc Natl Acad Sci U S A. (2006) Toward understanding the genetics of alcohol drinking through transcriptome meta-analysis. PubMed
Summary:		Microarray analyses of brain gene expression in three selected lines, and six isogenic strains of mice known to differ markedly in voluntary alcohol consumption provided >4.5 million data points for a meta-analysis. A total of 107 arrays were obtained and arranged into six experimental data sets, allowing the identification of 3,800 unique genes significantly and consistently changed between all models of high or low amounts of alcohol consumption. Here we select the 75 genes with the largest effect size (\|d\|) and lowest Q values.

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_027758.4	NP_082034.1	NC_000074.5 range: 85689250..85796320

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0005622	intracellular	Cellular Component	IEA
GO:0005096	GTPase activator activity	Molecular Function	IEA
GO:0005097	Rab GTPase activator activity	Molecular Function	IEA
GO:0005509	calcium ion binding	Molecular Function	RCA (16141072)
GO:0032313	regulation of Rab GTPase activity	Biological Process	IEA