ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

Cln6

Full Name:

ceroid-lipofuscinosis, neuronal 6

Alias:

1810065L06Rik|AW743417|D9Bwg1455e|nclf

Organism:

Mus musculus (Mouse)

Chromosome:

Genetic Location:

9 B

Physical Location:

62686593-62699808 on NC_000075.5

Gene Type:

protein-coding

Human Ortholog:

GeneID: 54982 Symbol (Name): CLN6 (ceroid-lipofuscinosis, neuronal 6, late infantile, variant)

Ortholog Status:

The human GeneID 54982 is not in current human dataset.

Gene in Ethanol Study Datasets

QTL Information

QTL	Phenotype	Chr	Peak (cM)	LOD	P Value	Range	Status	QTL Link
Ap5q	Alcohol Preference Drinking	9	25	10-35 (cM)	4.8		Significant	PARC

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_001033175.2	NP_001028347.1	NC_000075.5 range: 62686593..62699808

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0005575	cellular_component	Cellular Component	ND
GO:0005783	endoplasmic reticulum	Cellular Component	ISS (11727201)
GO:0005788	endoplasmic reticulum lumen	Cellular Component	ISS (11727201)
GO:0003674	molecular_function	Molecular Function	ND
GO:0042803	protein homodimerization activity	Molecular Function	ISS (11727201)
GO:0001573	ganglioside metabolic process	Biological Process	ISS (11727201)
GO:0044265	cellular macromolecule catabolic process	Biological Process	IMP (15647513)
GO:0031987	locomotion during locomotory behavior	Biological Process	IMP (9600738)
GO:0030203	glycosaminoglycan metabolic process	Biological Process	ISS (11727201)
GO:0008203	cholesterol metabolic process	Biological Process	ISS (11727201)
GO:0007601	visual perception	Biological Process	IMP (9600738)
GO:0007042	lysosomal lumen acidification	Biological Process	ISS (11727201)
GO:0007040	lysosome organization and biogenesis	Biological Process	IMP (9600738)
GO:0045862	positive regulation of proteolysis	Biological Process	ISS (11727201)