ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

PDE5A

Full Name:

phosphodiesterase 5A, cGMP-specific

Alias:

CGB-PDE|CN5A|PDE5|PDE5A1

Organism:

Homo sapiens (Human)

Chromosome:

4

Genetic Location:

4q25-q27

Physical Location:

120634997-120769428 on NC_000004.10, complement

Gene Type:

protein-coding

Orthologs:

This gene has no orthologs in other dataset(s).

Gene in Ethanol Study Datasets

Linkage Dataset

Marker

LOD

P value

Location (bp)

D4S423

2.61

0.0003

92691777

D4S427

3.53

0.00003

121646580

Region:		92691777-121646580
Phenotype:		ADSX (number of DSM-IV AD symptoms)
Name:		16534506
Method:		Linkage
Publication:		Prescott et al. Mol Psychiatry. (2006) Genomewide linkage study in the Irish affected sib pair study of alcohol dependence: evidence for a susceptibility region for symptoms of alcohol dependence on chromosome 4. PubMed
Summary:		We conducted a genome scan in the Irish Affected Sib Pair Study of Alcohol Dependence (IASPSAD). A 4 cM genome scan was conducted using 474 families of which most (96%) were comprised by affected sib pairs. Nonparametric and quantitative linkage analyses were conducted using DSM-IV alcohol dependence (AD) and number of DSM-IV AD symptoms (ADSX). Quantitative results indicate strong linkage for number of AD criteria to a broad region of chromosome 4, ranging from 4q22 to 4q32 (peak multipoint LOD=4.59, P=2.1 x 10(-6), at D4S1611). We got the gene list in the region between two markers D4S423 and D4S427 as markers between (included) these two markers have LOD scores >2 with P value <0.0003.

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_001083.3	NP_001074.2	NC_000004.10 range: 120634997..120769428, complement
NM_033430.2	NP_236914.2	NC_000004.10 range: 120634997..120769428, complement
NM_033437.2	NP_246273.2	NC_000004.10 range: 120634997..120769428, complement

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0005575	cellular_component	Cellular Component	ND
GO:0000166	nucleotide binding	Molecular Function	IEA
GO:0030553	cGMP binding	Molecular Function	IEA
GO:0016787	hydrolase activity	Molecular Function	IEA
GO:0008270	zinc ion binding	Molecular Function	NAS
GO:0047555	3',5'-cyclic-GMP phosphodiesterase activity	Molecular Function	IEA
GO:0004114	3',5'-cyclic-nucleotide phosphodiesterase activity	Molecular Function	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0000287	magnesium ion binding	Molecular Function	IEA
GO:0007165	signal transduction	Biological Process	IEA
GO:0008150	biological_process	Biological Process	ND
GO:0009187	cyclic nucleotide metabolic process	Biological Process	NAS
GO:0007165	signal transduction	Biological Process	NAS

Other Database Cross Links

NCBI Entrez Gene:

HGNC:

Ensembl:

ENSG00000138735

MIM:

HPRD:

HuGE Navigator:

dbSNP:

GeneCard:

AceView: