ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

Vangl2

Full Name:

vang-like 2 (van gogh, Drosophila)

Alias:

Organism:

Mus musculus (Mouse)

Chromosome:

Genetic Location:

1 H3|1 93.4 cM

Physical Location:

173934501-173957398 on NC_000067.5, complement

Gene Type:

protein-coding

Human Ortholog:

GeneID: 57216 Symbol (Name): VANGL2 (vang-like 2 (van gogh, Drosophila))

Ortholog Status:

The human GeneID 57216 is not in current human dataset.

Gene in Ethanol Study Datasets

QTL Information

QTL	Phenotype	Chr	Peak (cM)	LOD	P Value	Range	Status	QTL Link
Alcw1	Acute Alcohol Withdrawal	1	96	172.3-176.5 (Mb)	5.6	3.00E-07	Significant	PARC
Calw1/Alcdp1	Chronic Alcohol Withdrawal	1	96	89-106.3 (cM)	7.6	2.00E-09	Significant	PARC
Ap1q	Alcohol Preference Drinking	1	76	45-95 (cM)	4.5		Significant	PARC

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_033509.3	NP_277044.1	NC_000067.5 range: 173934501..173957398, complement

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0016020	membrane	Cellular Component	IEA
GO:0016324	apical plasma membrane	Cellular Component	IDA (16687519)
GO:0016021	integral to membrane	Cellular Component	RCA (12466851)
GO:0016021	integral to membrane	Cellular Component	ISS (15456783)
GO:0005515	protein binding	Molecular Function	IPI (15456783\|16687519)
GO:0045176	apical protein localization	Biological Process	IMP (16495441\|16687519)
GO:0035058	sensory cilium biogenesis	Biological Process	IGI (16170314)
GO:0001736	establishment of planar polarity	Biological Process	IMP (12724779\|15637299)
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0001947	heart looping	Biological Process	IMP (11440971)
GO:0001843	neural tube closure	Biological Process	IMP (11709546\|12499390)
GO:0001843	neural tube closure	Biological Process	IGI (14512015\|15229603)
GO:0045197	establishment and/or maintenance of epithelial cell polarity	Biological Process	IMP (17376975)