Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10011818

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10011818
Fusion NameHBV-PLCL1 integration
ValidatedYes
Curated WayVISDB1.0
MethodPCR and Sanger sequencing
Wet AssayYes
Sample ID781
Sample Name781Ca
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30271481
JournalJournal of Cancer
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandq33.1
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start198973674
Hg19 End198973674
Hg38 Start198108950
Hg38 End198108950
Junction Sequence-
Target Gene
Target GenePLCL1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11371
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypePolymerase|
Integrated Virus SequenceACTGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGT| |TTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGG
ViMIC ID-