Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10019627

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10019627
Fusion NameHBV-LOC105374039 integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusFinder
Wet AssayNo
Sample IDTCGA-DD-A116
Sample NameTCGA-DD-A116-11A
Sample TypeNontumor
Age68
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID28622513
JournalCell
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandq13.13
Human Strand
Human Integration Location TypeIntronic
Hg19 Start111199050
Hg19 End111199050
Hg38 Start111480203
Hg38 End111480203
Junction Sequence-
Target Gene
Target GeneENSG00000239311, CD96
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11548
Virus Breakpoint21792
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATA
ViMIC ID-