Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20012030

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20012030
Fusion NameHPV-SCN5A integration
ValidatedNo
Curated WayViMIC
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameSCC-1
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33023834
JournalJournal of Genetics and genomics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandp22.2
Human Strand+
Human Integration Location Typeintronic
Hg19 Start38688844
Hg19 End38688845
Hg38 Start38647353
Hg38 End38647354
Junction Sequence-
Target Gene
Target GeneSCN5A
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV58
Virus Genome AccessionD90400.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 58 complete genome
Virus Genome Length7824 bp
Virus Breakpoint14457
Virus Breakpoint2-
Virus Gene NameHpV58gp7_L2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5404185