| Basic Information ▶ | |
| VISDB ID | TVIS20020501 |
|---|---|
| Fusion Name | HPV-RN7SKP185 integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | HPV double capture and next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | R303 |
| Sample Type | Tumor |
| Age | <65 (45); >65 (35) |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Head and Neck squamous cell carcinoma |
| Disease Abbreviation | HNSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35398964 |
| Journal | Molecular Oncology |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr20 |
| Cytogenetic Band | q11.23,q12 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 36530585 |
| Hg19 End | 37902183 |
| Hg38 Start | 37902183 |
| Hg38 End | 39273540 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | RN7SKP185, RN7SL237P, ENSG00000277550, ENSG00000277829, ENSG00000275285, ENSG00000224635, ENSG00000275401, SNORA71, SNORA71B, SNORA71A, SNORA71C, SNORA71D, SNORA71, SNHG11, SNORA71E, SNORA60, MIR548O2, RPS3P2, ENSG00000213959, Metazoa_SRP, SLC32A1, RN7SKP173, RN7SL116P, ENSG00000274825, DHX35-DT, ENSG00000277581, NPM1P19, ENSG00000300619, ENSG00000287983, VSTM2L, RPRD1B, KIAA1755, ENSG00000206249, LBP, SNHG17, ADIG, ENSG00000289012, ENSG00000304652, ARHGAP40, ENSG00000301682, ACTR5, ENSG00000297212, PPP1R16B, DHX35, LINC01734, ENSG00000305049, TTI1, TGM2, ENSG00000293724, BPI, ENSG00000285347, ENSG00000285100, RALGAPB, ENSG00000301653, FAM83D, ENSG00000300599 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | NC_028125 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 163 isolate KC3, complete genome |
| Virus Genome Length | 7233 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D