| Basic Information ▶ | |
| VISDB ID | TVIS20020566 |
|---|---|
| Fusion Name | HPV-CCR7 integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | HPV double capture and next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | R595 |
| Sample Type | Tumor |
| Age | <65 (45); >65 (35) |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Head and Neck squamous cell carcinoma |
| Disease Abbreviation | HNSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35398964 |
| Journal | Molecular Oncology |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr17 |
| Cytogenetic Band | q21.2 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 38645356 |
| Hg19 End | 40489104 |
| Hg38 Start | 40489104 |
| Hg38 End | 42337086 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | CCR7, ENSG00000296406, ENSG00000279775, KRT224P, ENSG00000300075, KRT24, ENSG00000291165, KRT223P, KRT25, KRT26, ENSG00000298797, ENSG00000264488, KRT10, KRT40, KRTAP3-3, KRTAP3-2, KRTAP3-4P, KRTAP1-5, KRTAP1-4, KRTAP1-3, KRTAP1-1, KRTAP2-1, KRTAP2-2, KRTAP2-3, KRTAP2-4, KRTAP2-5P, KRTAP4-7, KRTAP4-8, KRTAP4-16, KRTAP4-9, ENSG00000295967, KRTAP4-11, KRTAP4-5, KRTAP4-4, KRTAP4-3, KRTAP4-2, KRTAP4-1, KRTAP4-17P, KRTAP9-1, KRTAP9-12P, ENSG00000308912, KRTAP9-2, KRTAP9-3, KRTAP9-4, KRTAP9-9, KRTAP9-6, KRTAP9-11P, KRTAP9-7, KRTAP9-10P, KRTAP29-1, KRTAP16-1, KRTAP17-1, TBC1D3P7, ENSG00000307916, ENSG00000108516, KRT33A, KRT34, KRT31, KRT41P, KRT37, KRT38, KRT32, RNU2-32P, KRT35, KRT36, KRT13, ENSG00000229732, ENSG00000295342, MIR6510, ENSG00000310140, KRT19, ENSG00000310161, ENSG00000310122, ENSG00000296687, KRT17, ENSG00000289252, ENSG00000278954, ENSG00000309822, EIF1, RNA5SP442, RN7SL399P, ENSG00000309439, FKBP10, ENSG00000259623, ENSG00000298152, ENSG00000274630, ENSG00000297600, KAT2A, HCRT, ENSG00000280295, ENSG00000267758, ENSG00000278829, ENSG00000308596, ENSG00000266088, ENSG00000308563, ENSG00000278834, KRT222, ENSG00000300052, KRT27, KRT28, KRT10-AS1, KRT12, KRT20, ENSG00000234477, KRT23, KRT39, KRTAP3-1, ENSG00000287602, KRTAP4-12, KRTAP4-6, KRTAP9-8, ENSG00000307895, KRT33B, KRT43P, KRT15, KRT9, KRT14, KRT16, KRT42P, KRT42P, GAST, HAP1, JUP, NT5C3B, KLHL10, KLHL11, ACLY, CNP, DNAJC7, NKIRAS2, C17orf113, ENSG00000294424, DHX58, ENSG00000267261, HSPB9, RAB5C, RAB5C-AS1, KCNH4, GHDC, ENSG00000236194, STAT5A, TNS4, ENSG00000298565, SMARCE1, ENSG00000264058, ENSG00000306126, ENSG00000234859, LINC00974, ENSG00000309800, P3H4, ZNF385C, STAT5B, STAT3, ENSG00000265359, ODAD4 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | NC_028125 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 163 isolate KC3, complete genome |
| Virus Genome Length | 7233 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D