| Basic Information ▶ | |
| VISDB ID | TVIS20020598 |
|---|---|
| Fusion Name | HPV-LINC01305 integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | HPV double capture and next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | R619 |
| Sample Type | Tumor |
| Age | <65 (45); >65 (35) |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Head and Neck squamous cell carcinoma |
| Disease Abbreviation | HNSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35398964 |
| Journal | Molecular Oncology |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr2 |
| Cytogenetic Band | q31.1 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 175183448 |
| Hg19 End | 176048176 |
| Hg38 Start | 174318720 |
| Hg38 End | 175183448 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | LINC01305, ENSG00000307106, ENSG00000280414, SP9, GPR155-DT, RPA3P1, ENSG00000279884, RNU6-5P, ENSG00000237798, ENSG00000309705, ENSG00000290018, H3P6, ENSG00000309691, ENSG00000304260, RNU6-763P, RNU6-1290P, RPL21P31, ENSG00000277948, ENSG00000229750, MIR933, ENSG00000293891, Y_RNA, ENSG00000301915, CIR1, SCRN3, CHRNA1, ATP5MC3, GPR155, ENSG00000236449, WIPF1, CHN1, ATF2 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | NC_028125 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 163 isolate KC3, complete genome |
| Virus Genome Length | 7233 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D