| Basic Information ▶ | |
| VISDB ID | TVIS20020615 |
|---|---|
| Fusion Name | HPV-ENSG00000296343 integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | HPV double capture and next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | R620 |
| Sample Type | Tumor |
| Age | <65 (45); >65 (35) |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Head and Neck squamous cell carcinoma |
| Disease Abbreviation | HNSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35398964 |
| Journal | Molecular Oncology |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr9 |
| Cytogenetic Band | q22.32,q22.33 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 97834684 |
| Hg19 End | 100596966 |
| Hg38 Start | 95072402 |
| Hg38 End | 97834684 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | ENSG00000296343, MIR23B, MIR27B, MIR3074, MIR24-1, ENSG00000229065, ENSG00000223849, RNA5SP288, ENSG00000296603, ENSG00000230221, ENSG00000271384, MT1P1, ENSG00000271314, ENSG00000271155, ENSG00000271659, ENSG00000297470, ENSG00000227358, ENSG00000307709, ENSG00000268926, ENSG00000298993, RNU2-46P, RNA5SP289, PARK7P2, ENSG00000302397, Y_RNA, ENSG00000302382, ENSG00000302362, EIF4BP3, ENSG00000309674, ENSG00000295713, ENSG00000301032, RNU6-1160P, NSA2P7, ENSG00000286835, ENSG00000300673, ENSG00000300691, ENSG00000294402, ENSG00000294420, ENSG00000233820, PTMAP11, ENSG00000227257, NUTM2G, ENSG00000294229, YRDCP2, TCEA1P1, GAS2L1P2, GAS2L1P2, VN1R51P, FAM220CP, ENSG00000277103, RNU6-798P, ZNF322P1, ENSG00000289356, MIR1302-8, ENSG00000297615, ENSG00000301262, ENSG00000231521, KRT18P13, ENSG00000260677, ENSG00000307267, PTCH1, ENSG00000229345, LINC00092, ENSG00000302345, ENSG00000287187, HSD17B3, HSD17B3-AS1, ENSG00000307454, ZNF367, ENSG00000287302, ENSG00000294376, PRXL2C, ZNF510, ANKRD18CP, ENSG00000203279, ENSG00000235494, SUGT1P4, STRA6LP, CCDC180, ENSG00000286375, TDRD7, TSTD2, XPA, AOPEP, ENSG00000305315, ENSG00000305334, ENSG00000228142, ERCC6L2-AS1, ERCC6L2, ENSG00000237212, ENSG00000275465, ENSG00000285269, SLC35D2, CDC14B, ENSG00000224848, ZNF782, ENSG00000294209, MFSD14CP, MFSD14CP, CTSV, SUGT1P4-STRA6LP, SUGT1P4-STRA6LP-CCDC180, ENSG00000228957, NCBP1, PTCSC2, FANCC, HABP4, TMOD1, ENSG00000228174 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | NC_028125 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 163 isolate KC3, complete genome |
| Virus Genome Length | 7233 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D