Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20020716

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20020716
Fusion NameHPV-ENSG00000301226 integration
ValidatedYes
Curated WayCurated
MethodHPV double capture and next-generation sequencing
Wet AssayYes
Sample ID-
Sample NameR295
Sample TypeTumor
Age<65 (45); >65 (35)
Gender-
Disease Information
Disease NameHead and Neck squamous cell carcinoma
Disease AbbreviationHNSCC
CancerYes
Literature
PubMed ID35398964
JournalMolecular Oncology
Published Year2022
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr17
Cytogenetic Bandq25.3
Human Strand
Human Integration Location Typeexonic
Hg19 Start77801666
Hg19 End79827867
Hg38 Start79827867
Hg38 End81869991
Junction Sequence-
Target Gene
Target GeneENSG00000301226, ENSG00000262343, ENSG00000275516, ENSG00000262172, ENSG00000261978, MIR1268B, EIF4A3, ENSG00000279259, ENSG00000309283, ENSG00000262580, ENSG00000262979, ENSG00000276863, ENSG00000280248, MIR4730, ENSG00000260369, ENSG00000296743, ENSG00000279273, NPTX1, ENSG00000290024, ENSG00000262000, ENSG00000271340, RPL32P31, ENSG00000289764, ENSG00000310008, RPL31P7, ENSG00000299917, ENSG00000262833, ENSG00000287403, ENSG00000297677, ENSG00000262313, ENSG00000262662, RPL12P37, ENSG00000263218, ENSG00000280351, ENSG00000304215, ENSG00000262098, MIR657, MIR3065, MIR338, MIR1250, ENSG00000263167, NDUFAF8, ENSG00000276101, LINC00482, ENSG00000307292, RENO1, ENSG00000274833, ENSG00000262877, ENSG00000289913, ENSG00000306930, MIR4740, ENSG00000295112, MIR3186, ENSG00000289140, ENSG00000289182, FSCN2, Y_RNA, OXLD1, CCDC137, ARL16, MIR6786, ENSG00000275902, ENSG00000262049, SLC25A10, ENSG00000295310, MCRIP1, PPP1R27, ENSG00000262831, ENSG00000293751, ENSG00000278876, ENSG00000262413, CBX4, LINC01979, LINC01978, ENSG00000289689, GAA, ENSG00000275479, SLC26A11, RNF213-AS1, ENDOV, ENSG00000301193, ENSG00000261924, ENSG00000262873, BAIAP2-DT, ENSG00000304189, BAIAP2, PVALEF, CEP131, ENSG00000262115, TEPSIN, ENSG00000260005, TMEM105, ENSG00000307306, ENSG00000307327, ENSG00000263154, LINC03048, ENSG00000263271, LINC01971, ACTG1, FAAP100, NPLOC4, TSPAN10, HGS, MRPL12, ENSG00000262660, ENSG00000303104, GCGR, P4HB, ARHGDIA, TBC1D16, CCDC40, CARD14, SGSH, RNF213, CHMP6, AATK, SLC38A10, ENSG00000279187, BAHCC1, ENSG00000279692, ENSG00000229848, PDE6G, RPTOR
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV35
Virus Genome Accession-
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-