| Basic Information ▶ | |
| VISDB ID | TVIS20025580 |
|---|---|
| Fusion Name | HPV-SLC38A4-AS1 integration |
| Validated | No |
| Curated Way | Curated |
| Method | Viral capture sequencing (VCS) and whole genome sequencing, followed by analysis using FuseSV |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | T120 |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Small cell cervical carcinoma |
| Disease Abbreviation | SCCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 36216793 |
| Journal | Nature Communications |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr12 |
| Cytogenetic Band | q13.11 |
| Human Strand | + |
| Human Integration Location Type | intronic |
| Hg19 Start | 47200631 |
| Hg19 End | 47200631 |
| Hg38 Start | 46806848 |
| Hg38 End | 46806848 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | SLC38A4-AS1, SLC38A4 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV18 |
| Virus Genome Accession | NC_001357.1 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus - 18, complete genome |
| Virus Genome Length | 7857 bp |
| Virus Breakpoint1 | 7281 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D