| Basic Information ▶ | |
| VISDB ID | TVIS20068864 |
|---|---|
| Fusion Name | HPV-ENSG00000241462 integration |
| Validated | No |
| Curated Way | Curated |
| Method | Nanopore Long-Read Sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | HPV18 tissue |
| Sample Type | Tumor |
| Age | - |
| Gender | Female |
| Disease Information ▶ | |
| Disease Name | Cervical Cancer |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 38932482 |
| Journal | Journal of Medical Virology |
| Published Year | 2024 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr17 |
| Cytogenetic Band | q22,q23.1 |
| Human Strand | + |
| Human Integration Location Type | exonic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 58846268 |
| Hg38 End | 59860925 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | ENSG00000241462, Metazoa_SRP, RN7SL716P, RNU2-58P, MIR454, MIR301A, ENSG00000294292, ENSG00000294277, PRR11-AS1, Y_RNA, SNRPGP17, ENSG00000278863, ENSG00000303188, MIR4729, RNU4-13P, ENSG00000273702, ENSG00000308485, MIR21, ENSG00000307176, RNU6-450P, ENSG00000263938, TRIM37, ENSG00000303842, PRR11, SPDYE22P, ENSG00000265303, SMG8, ENSG00000300447, DHX40, ENSG00000297347, PTRH2, TUBD1, PPM1E, ENSG00000224738, SKA2, GDPD1, YPEL2, LINC01476, ENSG00000300461, CLTC, VMP1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV18 |
| Virus Genome Accession | gi|60975|lcl|HPV18REF.1| |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human Papillomavirus 18 (HPV18), complete genome |
| Virus Genome Length | 7857 bp |
| Virus Breakpoint1 | 4994 |
| Virus Breakpoint2 | 7857 |
| Virus Gene Name | E2 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D