Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS42000292

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS42000292
Fusion NameEBV-ABCB5 integration
ValidatedNo
Curated WayVISDB1.0
MethodWhole-genome sequencing
Wet AssayNo
Sample IDC666-1
Sample NameC666-1
Sample TypeCell line
Age-
Gender-
Disease Information
Disease NameNasopharyngeal carcinoma
Disease AbbreviationNPC
CancerYes
Literature
PubMed ID26819646
JournalVirus Research
Published Year2005
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandp21.1
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start20764255
Hg19 End20764255
Hg38 Start20724632
Hg38 End20724632
Junction Sequence-
Target Gene
Target GeneABCB5
Nearby Gene-
Distance-
Virus Information
Virus NameEpstein-Barr Virus
Virus Subtype Name-
Virus Genome AccessionNC007605
TaxonomyID10376
Virus AbbreviationEBV
Virus GenomeHuman gammaherpesvirus 4, complete genome
Virus Genome Length171823
Virus Breakpoint1155965
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceACACACGCTGGCCCCATCGGCCTTGCGCCGGCCCAGTAGCTTGATGACGATGCCACATGGCACCACATACCCCTGTTTATCCGATGGAATGACGGCGCAT| |TTCTCGTGCGTGTACACCGTCTCGAGTATGTCGTAGACATGGAAGTCCAGAGGGCTTCCGTGGGTGTCTGCCTCCGGCCTTGCCGTGCCCTCTTGGGCAC
ViMIC ID-