| Basic Information ▶ | |
| VISDB ID | TVIS43000114 |
|---|---|
| Fusion Name | MCV-NPM1P46 integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | Viral capture sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | LoKe |
| Sample Type | Cell line |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Merkel cell carcinoma |
| Disease Abbreviation | MCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 32833988 |
| Journal | PLoS Pathogen |
| Published Year | 2020 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr2 |
| Cytogenetic Band | q33.1 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 197314282 |
| Hg38 End | 197433173 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | NPM1P46, ENSG00000202434, ANKRD44-DT, SF3B1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Merkel cell polyomavirus |
| Virus Subtype Name | - |
| Virus Genome Accession | JN707599.1 |
| TaxonomyID | 493803 |
| Virus Abbreviation | MCV |
| Virus Genome | Synthetic construct VP2, VP3, VP1, and large T antigen genes, complete cds; precursor microRNA M1, precursor RNA, complete sequence; and small T antigen gene, complete cds |
| Virus Genome Length | 5387 bp |
| Virus Breakpoint1 | 1811 |
| Virus Breakpoint2 | 1802 |
| Virus Gene Name | - |
| Virus Region Type | G4194A STOP |
| Integrated Virus Sequence | - |
| ViMIC ID | 7300004 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D