Search Results


VISDB ID Virus Name Subtype Virus Genome Breakpoint 1 Breakpoint 2 Human Genome Chromosome Start End Loci Target Gene Sample Type Disease Method PubMed ID Year Curated Way ▼
TVIS20020659 Human Papillomavirus HPV16 NC_028125
 - - hg19 22 35311668 35707661 q12.3 MIR3909, MIR6069, ENSG00000282602, ENSG00000282041, TRMT112P8, ENSG00000273044, ENSG00000304386, ENSG00000288777, ENSG00000268818, ENSG00000228587, MRPS16P3, TOM1, MCM5, RASD2, ENSG00000304364, MB, HMOX1, APOL6 Tumor Head and Neck squamous cell carcinoma HPV double capture and next-generation sequencing 35398964 2022 Curated
TVIS20020676 Human Papillomavirus HPV16 NC_028125
 - - hg19 22 16798762 17279652 q11.1 HSFY1P1, HSFY1P1, GPM6BP3, ENSG00000283535, ENSG00000237835, ENSG00000237689, MTND1P17, ENSG00000237358, ENSG00000298208, ENSG00000297273, ENSG00000225480, IGKV1OR22-5, IGKV2OR22-4, IGKV2OR22-3, IGKV3OR22-2, IGKV1OR22-1, ENSG00000285045, IL9RP6, ENSG00000310179, VN1R9P, ENSG00000295360, CECR7, ENSG00000273442, RPL31P62, HDHD5-AS1, RPL32P5, FAM32BP, CECR3, XKR3, ZNF402P, GAB4, ENSG00000295065, IL17RA, TMEM121B, LINC01664, HDHD5, ADA2, ENSG00000296914, ENSG00000290931, ENSG00000308779 Tumor Head and Neck squamous cell carcinoma HPV double capture and next-generation sequencing 35398964 2022 Curated
TVIS20020719 Human Papillomavirus HPV35 - - - hg19 22 43393718 43789724 q13.2 ENSG00000286801, ENSG00000233157, LINC01639, MPPED1, EFCAB6-AS1, EFCAB6, ENSG00000299489 Tumor Head and Neck squamous cell carcinoma HPV double capture and next-generation sequencing 35398964 2022 Curated
TVIS20020720 Human Papillomavirus HPV35 - - - hg19 22 43521208 43917088 q13.2,q13.31 ENSG00000233157, HMGN2P9, EFCAB6-DT, ENSG00000299503, ENSG00000299520, PNPLA5, EFCAB6-AS1, SULT4A1, EFCAB6, ENSG00000299489 Tumor Head and Neck squamous cell carcinoma HPV double capture and next-generation sequencing 35398964 2022 Curated
TVIS20020721 Human Papillomavirus HPV35 - - - hg19 22 43535742 43931622 q13.2,q13.31 ENSG00000233157, HMGN2P9, EFCAB6-DT, ENSG00000299503, ENSG00000299520, PNPLA5, ENSG00000304926, EFCAB6-AS1, SULT4A1, PNPLA3, EFCAB6, ENSG00000299489 Tumor Head and Neck squamous cell carcinoma HPV double capture and next-generation sequencing 35398964 2022 Curated
TVIS20020722 Human Papillomavirus HPV35 - - - hg19 22 43538797 43934677 q13.2,q13.31 ENSG00000233157, HMGN2P9, EFCAB6-DT, ENSG00000299503, ENSG00000299520, PNPLA5, ENSG00000304926, EFCAB6-AS1, SULT4A1, PNPLA3, EFCAB6, ENSG00000299489 Tumor Head and Neck squamous cell carcinoma HPV double capture and next-generation sequencing 35398964 2022 Curated
TVIS30019085 Human Immunodeficiency Virus - HXB2
 - - hg38 22 40953447 40953447 q13.2 RBX1 Patient - Integration Site Loop Amplification (ISLA) and next-generation sequencing 35026153 2024 Curated
TVIS30019093 Human Immunodeficiency Virus - HXB2
 - - hg38 22 49834255 49834255 q13.33 ENSG00000260613 Patient - Integration Site Loop Amplification (ISLA) and next-generation sequencing 35026153 2024 Curated
TVIS30019105 Human Immunodeficiency Virus - HXB2
 - - hg38 22 49821811 49821811 q13.33 BRD1 Patient - Integration Site Loop Amplification (ISLA) and next-generation sequencing 35026153 2024 Curated
TVIS30019147 Human Immunodeficiency Virus - HXB2
 - - hg38 22 42147199 42147199 q13.2 CYP2D7 Patient - Integration Site Loop Amplification (ISLA) and next-generation sequencing 35026153 2024 Curated