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  glioblastoma [Mes]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [Mes]

Displaying 91-100 of 101 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395880Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_A02glioblastoma [Mes]
GSE57872GSM1395884Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_A06glioblastoma [Mes]
GSE57872GSM1395889Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_A11glioblastoma [Mes]
GSE57872GSM1395925Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_D11glioblastoma [Mes]
GSE57872GSM1395927Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_E01glioblastoma [Mes]
GSE57872GSM1395931Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_E05glioblastoma [Mes]
GSE57872GSM1395934Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_E08glioblastoma [Mes]
GSE57872GSM1395946Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_F08glioblastoma [Mes]
GSE57872GSM1395947Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_F09glioblastoma [Mes]
GSE57872GSM1395962Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_G12glioblastoma [Mes]

Gene rank in glioblastoma [Mes]

Displaying 5711-5720 of 5942 results.
Rank orderGene SymbolEnsembl ID
5711HMGXB3ENSG00000113716
5712ZNF235ENSG00000159917
5713CTTNBP2ENSG00000077063
5714COMMD8ENSG00000169019
5715MLF1IP
5716GTF2E1ENSG00000153767
5717APODENSG00000189058
5718POLMENSG00000122678
5719CRTAPENSG00000170275
5720SAMD4BENSG00000179134