Related Resources

  • Gene and protein expression in adult haematopoiesis Single-Cell Gene Expression Atlas (A single-cell resolution map of mouse hematopoietic stem and progenitor cell differentiation)
  • Single-cell RNA-Seq Genome Browser (A single-cell transcriptome browser to visualize and compare data.)
  • LungGENS ('LungGENS': a web-based tool for mapping single-cell gene expression in the developing lung)
  • SCDE (The scde package implements a set of statistical methods for analyzing single-cell RNA-seq data.)
  • BASiCS (Bayesian Analysis of Single-Cell Sequencing Data is an integrated Bayesian hierarchical model )
  • MAST (Model-based Analysis of Single-cell Transcriptomics)
  • scVEGs (scVEGs is a novel algorithm for single-cell RNA-seq (scRNA-seq) data to determine significant variably expressed genes )
  • Monocle (Differential expression and time-series analysis for single-cell RNA-Seq)
  • FastProject (Dimensionality reduction for single cell RNA-seq data)
  • D3E (D3E is a tool for identifying differentially-expressed genes, based on single-cell RNA-seq data.)
  • ROTS (Calculates the Reproducibility-Optimized Test Statistic (ROTS) for differential testing in omics data)
  • BPSC (Beta-Poisson model for single-cell RNA-seq data analyses)
  • scDD (scDD: A statistical approach for identifying differential distributions in single-cell RNA-seq experiments)