scRNASeqDB - CellView Site

Overall Design	Total 213 H1 single cells and 247 H1-Fucci single cells were sequenced. The 213 H1 cells were used to evaluate Oscope in identifying oscillatory genes. The H1-Fucci cells were used to confirm the cell cycle gene cluster identified by Oscope in the H1 hESCs. Normalized expected counts are provided in GSE64016_H1andFUCCI_normalized_EC.csv.gz
Summary	Oscillatory gene expression is fundamental to mammalian development, but technologies to monitor expression oscillations are limited. We have developed a statistical approach called Oscope to identify and characterize the transcriptional dynamics of oscillating genes in single-cell RNA-seq data from an unsynchronized cell population. Applications to a number of data sets, include a single-cell RNA-seq data set of human embroyonic stem cells (hESCs), demonstrate advantages of the approach and also identify a potential artifact in the Fluidigm C1 platform.
Dataset view	GSE64016
PMID	26301841

Displaying 91-100 of 213 results.

Series	Sample	Instrument	Organism	Title	Cell Source
GSE64016	GSM1562477	Illumina HiSeq 2500	Homo sapiens	H1_Exp2.102	single H1 hESC
GSE64016	GSM1562478	Illumina HiSeq 2500	Homo sapiens	H1_Exp2.103	single H1 hESC
GSE64016	GSM1562479	Illumina HiSeq 2500	Homo sapiens	H1_Exp2.104	single H1 hESC
GSE64016	GSM1562480	Illumina HiSeq 2500	Homo sapiens	H1_Exp2.105	single H1 hESC
GSE64016	GSM1562481	Illumina HiSeq 2500	Homo sapiens	H1_Exp2.106	single H1 hESC
GSE64016	GSM1562482	Illumina HiSeq 2500	Homo sapiens	H1_Exp2.107	single H1 hESC
GSE64016	GSM1562483	Illumina HiSeq 2500	Homo sapiens	H1_Exp2.108	single H1 hESC
GSE64016	GSM1562484	Illumina HiSeq 2500	Homo sapiens	H1_Exp2.109	single H1 hESC
GSE64016	GSM1562485	Illumina HiSeq 2500	Homo sapiens	H1_Exp2.110	single H1 hESC
GSE64016	GSM1562486	Illumina HiSeq 2500	Homo sapiens	H1_Exp2.111	single H1 hESC

Displaying 17451-17460 of 17544 results.