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  single H1 hESC

Overall DesignTotal 213 H1 single cells and 247 H1-Fucci single cells were sequenced. The 213 H1 cells were used to evaluate Oscope in identifying oscillatory genes. The H1-Fucci cells were used to confirm the cell cycle gene cluster identified by Oscope in the H1 hESCs. Normalized expected counts are provided in GSE64016_H1andFUCCI_normalized_EC.csv.gz
SummaryOscillatory gene expression is fundamental to mammalian development, but technologies to monitor expression oscillations are limited. We have developed a statistical approach called Oscope to identify and characterize the transcriptional dynamics of oscillating genes in single-cell RNA-seq data from an unsynchronized cell population. Applications to a number of data sets, include a single-cell RNA-seq data set of human embroyonic stem cells (hESCs), demonstrate advantages of the approach and also identify a potential artifact in the Fluidigm C1 platform.
Dataset viewGSE64016
PMID26301841

Samples in single H1 hESC

Displaying 121-130 of 213 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE64016GSM1562507Illumina HiSeq 2500Homo sapiensH1_Exp2.134single H1 hESC
GSE64016GSM1562508Illumina HiSeq 2500Homo sapiensH1_Exp2.135single H1 hESC
GSE64016GSM1562509Illumina HiSeq 2500Homo sapiensH1_Exp2.136single H1 hESC
GSE64016GSM1562510Illumina HiSeq 2500Homo sapiensH1_Exp2.137single H1 hESC
GSE64016GSM1562511Illumina HiSeq 2500Homo sapiensH1_Exp2.138single H1 hESC
GSE64016GSM1562512Illumina HiSeq 2500Homo sapiensH1_Exp2.139single H1 hESC
GSE64016GSM1562513Illumina HiSeq 2500Homo sapiensH1_Exp2.140single H1 hESC
GSE64016GSM1562514Illumina HiSeq 2500Homo sapiensH1_Exp2.141single H1 hESC
GSE64016GSM1562515Illumina HiSeq 2500Homo sapiensH1_Exp2.142single H1 hESC
GSE64016GSM1562516Illumina HiSeq 2500Homo sapiensH1_Exp2.144single H1 hESC

Gene rank in single H1 hESC

Displaying 121-130 of 17544 results.
Rank orderGene SymbolEnsembl ID
121SNURFENSG00000273173
122GDI2ENSG00000057608
123RPL7AENSG00000148303
124H3F3AENSG00000163041
125CCT8ENSG00000156261
126SNRPNENSG00000128739
127SKP1ENSG00000113558
128MARCKSENSG00000277443
129RPL17ENSG00000265681
130FAM60AENSG00000139146