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  single H1 hESC

Overall DesignTotal 213 H1 single cells and 247 H1-Fucci single cells were sequenced. The 213 H1 cells were used to evaluate Oscope in identifying oscillatory genes. The H1-Fucci cells were used to confirm the cell cycle gene cluster identified by Oscope in the H1 hESCs. Normalized expected counts are provided in GSE64016_H1andFUCCI_normalized_EC.csv.gz
SummaryOscillatory gene expression is fundamental to mammalian development, but technologies to monitor expression oscillations are limited. We have developed a statistical approach called Oscope to identify and characterize the transcriptional dynamics of oscillating genes in single-cell RNA-seq data from an unsynchronized cell population. Applications to a number of data sets, include a single-cell RNA-seq data set of human embroyonic stem cells (hESCs), demonstrate advantages of the approach and also identify a potential artifact in the Fluidigm C1 platform.
Dataset viewGSE64016
PMID26301841

Samples in single H1 hESC

Displaying 171-180 of 213 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE64016GSM1562557Illumina HiSeq 2500Homo sapiensH1_Exp3.249single H1 hESC
GSE64016GSM1562558Illumina HiSeq 2500Homo sapiensH1_Exp3.250single H1 hESC
GSE64016GSM1562559Illumina HiSeq 2500Homo sapiensH1_Exp3.251single H1 hESC
GSE64016GSM1562560Illumina HiSeq 2500Homo sapiensH1_Exp3.252single H1 hESC
GSE64016GSM1562561Illumina HiSeq 2500Homo sapiensH1_Exp3.253single H1 hESC
GSE64016GSM1562562Illumina HiSeq 2500Homo sapiensH1_Exp3.254single H1 hESC
GSE64016GSM1562563Illumina HiSeq 2500Homo sapiensH1_Exp3.255single H1 hESC
GSE64016GSM1562564Illumina HiSeq 2500Homo sapiensH1_Exp3.256single H1 hESC
GSE64016GSM1562565Illumina HiSeq 2500Homo sapiensH1_Exp3.257single H1 hESC
GSE64016GSM1562566Illumina HiSeq 2500Homo sapiensH1_Exp3.258single H1 hESC

Gene rank in single H1 hESC

Displaying 17461-17470 of 17544 results.
Rank orderGene SymbolEnsembl ID
17461CALML6ENSG00000169885
17462FAM135BENSG00000147724
17463OR1K1ENSG00000165204
17464GSTA3ENSG00000174156
17465RXRGENSG00000143171
17466OR13C2ENSG00000276119
17467ITKENSG00000113263
17468DMRT3ENSG00000064218
17469CLEC5AENSG00000258227
17470OR6M1ENSG00000196099