Loading
scRNASeqDB
Home » Search by Cell » Cell View

Cell View

Cell Information

  glioblastoma [Pro]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [Pro]

Displaying 11-20 of 88 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395454Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_E08glioblastoma [Pro]
GSE57872GSM1395456Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_E10glioblastoma [Pro]
GSE57872GSM1395460Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_F02glioblastoma [Pro]
GSE57872GSM1395463Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_F05glioblastoma [Pro]
GSE57872GSM1395466Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_F08glioblastoma [Pro]
GSE57872GSM1395467Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_F09glioblastoma [Pro]
GSE57872GSM1395469Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_F11glioblastoma [Pro]
GSE57872GSM1395470Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_F12glioblastoma [Pro]
GSE57872GSM1395473Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_G03glioblastoma [Pro]
GSE57872GSM1395483Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_H01glioblastoma [Pro]

Gene rank in glioblastoma [Pro]

Displaying 141-150 of 5942 results.
Rank orderGene SymbolEnsembl ID
141TROVE2ENSG00000116747
142HNRNPRENSG00000125944
143ERGIC3ENSG00000125991
144CHCHD2ENSG00000106153
145LIMA1ENSG00000050405
146CNN3ENSG00000117519
147XRCC6ENSG00000196419
148SUMO2ENSG00000188612
149NCLENSG00000115053
150MIR1244-2ENSG00000283498