Loading
scRNASeqDB
Home » Search by Cell » Cell View

Cell View

Cell Information

  glioblastoma [Cla]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [Cla]

Displaying 11-20 of 45 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395650Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_E12glioblastoma [Cla]
GSE57872GSM1395783Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_A01glioblastoma [Cla]
GSE57872GSM1395788Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_A06glioblastoma [Cla]
GSE57872GSM1395789Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_A07glioblastoma [Cla]
GSE57872GSM1395791Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_A09glioblastoma [Cla]
GSE57872GSM1395799Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_B05glioblastoma [Cla]
GSE57872GSM1395800Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_B06glioblastoma [Cla]
GSE57872GSM1395802Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_B08glioblastoma [Cla]
GSE57872GSM1395811Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_C05glioblastoma [Cla]
GSE57872GSM1395813Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_C07glioblastoma [Cla]

Gene rank in glioblastoma [Cla]

Displaying 5821-5830 of 5942 results.
Rank orderGene SymbolEnsembl ID
5821LTB4RENSG00000213903
5822DCNENSG00000011465
5823MMP7ENSG00000137673
5824CYR61ENSG00000142871
5825MIR4647
5826TFENSG00000091513
5827FAM59A
5828SH3BGRENSG00000185437
5829ZNF30ENSG00000168661
5830IFT74ENSG00000096872