scRNASeqDB - CellView Site

Overall Design	Total 213 H1 single cells and 247 H1-Fucci single cells were sequenced. The 213 H1 cells were used to evaluate Oscope in identifying oscillatory genes. The H1-Fucci cells were used to confirm the cell cycle gene cluster identified by Oscope in the H1 hESCs. Normalized expected counts are provided in GSE64016_H1andFUCCI_normalized_EC.csv.gz
Summary	Oscillatory gene expression is fundamental to mammalian development, but technologies to monitor expression oscillations are limited. We have developed a statistical approach called Oscope to identify and characterize the transcriptional dynamics of oscillating genes in single-cell RNA-seq data from an unsynchronized cell population. Applications to a number of data sets, include a single-cell RNA-seq data set of human embroyonic stem cells (hESCs), demonstrate advantages of the approach and also identify a potential artifact in the Fluidigm C1 platform.
Dataset view	GSE64016
PMID	26301841

Displaying 11-20 of 213 results.

Series	Sample	Instrument	Organism	Title	Cell Source
GSE64016	GSM1562397	Illumina HiSeq 2500	Homo sapiens	H1_Exp1.012	single H1 hESC
GSE64016	GSM1562398	Illumina HiSeq 2500	Homo sapiens	H1_Exp1.014	single H1 hESC
GSE64016	GSM1562399	Illumina HiSeq 2500	Homo sapiens	H1_Exp1.015	single H1 hESC
GSE64016	GSM1562400	Illumina HiSeq 2500	Homo sapiens	H1_Exp1.016	single H1 hESC
GSE64016	GSM1562401	Illumina HiSeq 2500	Homo sapiens	H1_Exp1.017	single H1 hESC
GSE64016	GSM1562402	Illumina HiSeq 2500	Homo sapiens	H1_Exp1.018	single H1 hESC
GSE64016	GSM1562403	Illumina HiSeq 2500	Homo sapiens	H1_Exp1.019	single H1 hESC
GSE64016	GSM1562404	Illumina HiSeq 2500	Homo sapiens	H1_Exp1.020	single H1 hESC
GSE64016	GSM1562405	Illumina HiSeq 2500	Homo sapiens	H1_Exp1.021	single H1 hESC
GSE64016	GSM1562406	Illumina HiSeq 2500	Homo sapiens	H1_Exp1.022	single H1 hESC

Displaying 17461-17470 of 17544 results.