Loading
scRNASeqDB
Home » Search by Cell » Cell View

Cell View

Cell Information

  glioblastoma [Pro+Cla]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [Pro+Cla]

Displaying 11-20 of 20 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395516Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26-2_B10glioblastoma [Pro+Cla]
GSE57872GSM1395531Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26-2_D01glioblastoma [Pro+Cla]
GSE57872GSM1395564Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26-2_F10glioblastoma [Pro+Cla]
GSE57872GSM1395581Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26-2_H03glioblastoma [Pro+Cla]
GSE57872GSM1395807Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_C01glioblastoma [Pro+Cla]
GSE57872GSM1395825Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_D07glioblastoma [Pro+Cla]
GSE57872GSM1395835Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_E05glioblastoma [Pro+Cla]
GSE57872GSM1395854Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_F12glioblastoma [Pro+Cla]
GSE57872GSM1395859Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_G05glioblastoma [Pro+Cla]
GSE57872GSM1395861Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_G07glioblastoma [Pro+Cla]

Gene rank in glioblastoma [Pro+Cla]

Displaying 5921-5930 of 5942 results.
Rank orderGene SymbolEnsembl ID
5921OR5I1ENSG00000167825
5922OSR1ENSG00000143867
5923PCOLCE2ENSG00000163710
5924PIRTENSG00000233670
5925PLA1AENSG00000144837
5926PLA2G2AENSG00000188257
5927PRSS35ENSG00000146250
5928RAMP3ENSG00000122679
5929RGS1ENSG00000090104
5930RNASE4ENSG00000258818