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  glioblastoma [Neu]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [Neu]

Displaying 11-20 of 24 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395776Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_H06glioblastoma [Neu]
GSE57872GSM1395777Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_H07glioblastoma [Neu]
GSE57872GSM1395778Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_H08glioblastoma [Neu]
GSE57872GSM1395804Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_B10glioblastoma [Neu]
GSE57872GSM1395886Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_A08glioblastoma [Neu]
GSE57872GSM1395900Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_B10glioblastoma [Neu]
GSE57872GSM1395908Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_C06glioblastoma [Neu]
GSE57872GSM1395909Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_C07glioblastoma [Neu]
GSE57872GSM1395911Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_C09glioblastoma [Neu]
GSE57872GSM1395921Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_D07glioblastoma [Neu]

Gene rank in glioblastoma [Neu]

Displaying 111-120 of 5942 results.
Rank orderGene SymbolEnsembl ID
111CTTNENSG00000085733
112ANXA1ENSG00000135046
113SSR1ENSG00000124783
114CTSBENSG00000164733
115HNRNPKENSG00000165119
116RHOAENSG00000067560
117MAGED2ENSG00000102316
118WSB1ENSG00000109046
119RPL7ENSG00000147604
120CLIC4ENSG00000169504