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  HEK293T

Overall DesignSequencing libraries from cDNA was generated using in-house produced or commercial Tn5 and in a variety of tagmentation buffers and conditions.
SummaryMassively parallel DNA sequencing of thousands of samples in a single machine-run is now possible, but the preparation of the individual sequencing libraries is expensive and time-consuming. Tagmentation-based library construction, using the Tn5 transposase, is efficient for generating sequencing libraries but currently relies on undisclosed reagents, which severely limits development of novel applications and the execution of large scale projects. Here, we present simple and robust procedures for Tn5 transposase production and optimized reaction conditions for tagmentation-based sequencing library construction. We further show how molecular crowding agents both modulate library lengths and enable efficient tagmentation from sub-picogram amounts of cDNA. Comparison of single-cell RNA-sequencing libraries generated using produced and commercial Tn5 demonstrated equal performances in terms of gene detection and library characteristics. Finally, as naked Tn5 can be annealed to any oligonucleotide of choice, for example molecular barcodes in single-cell assays or methylated oligonucleotides for bisulfite sequencing, custom Tn5 production and tagmentation enables innovation in sequencing-based applications.
Dataset viewGSE58652
PMID25079858

Samples in HEK293T

Displaying 11-20 of 42 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE58652GSM1416398Illumina HiSeq 2000Homo sapiensinhouse_1pg_rep2HEK293T
GSE58652GSM1416399Illumina HiSeq 2000Homo sapiensinhouse_1pg_rep3HEK293T
GSE58652GSM1416400Illumina HiSeq 2000Homo sapiensinhouse_500pg_rep1HEK293T
GSE58652GSM1416401Illumina HiSeq 2000Homo sapiensinhouse_500pg_rep2HEK293T
GSE58652GSM1416402Illumina HiSeq 2000Homo sapiensinhouse_500pg_rep3HEK293T
GSE58652GSM1416403Illumina HiSeq 2000Homo sapiensinhouse_low_0.1pg_rep1HEK293T
GSE58652GSM1416404Illumina HiSeq 2000Homo sapiensinhouse_low_0.1pg_rep2HEK293T
GSE58652GSM1416405Illumina HiSeq 2000Homo sapiensinhouse_low_0.1pg_rep3HEK293T
GSE58652GSM1416406Illumina HiSeq 2000Homo sapiensinhouse_low_0.1pg_rep4HEK293T
GSE58652GSM1416407Illumina HiSeq 2000Homo sapiensinhouse_low_1pg_rep1HEK293T

Gene rank in HEK293T

Displaying 19421-19430 of 19442 results.
Rank orderGene SymbolEnsembl ID
19421ENAMENSG00000132464
19422HEATR4ENSG00000187105
19423SPNENSG00000197471
19424LOC643529
19425HHLA1ENSG00000132297
19426LOC729177
19427LOC100507091
19428MOV10L1ENSG00000073146
19429C1orf94ENSG00000142698
19430ADAM7ENSG00000069206