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  single H1 hESC

Overall DesignTotal 213 H1 single cells and 247 H1-Fucci single cells were sequenced. The 213 H1 cells were used to evaluate Oscope in identifying oscillatory genes. The H1-Fucci cells were used to confirm the cell cycle gene cluster identified by Oscope in the H1 hESCs. Normalized expected counts are provided in GSE64016_H1andFUCCI_normalized_EC.csv.gz
SummaryOscillatory gene expression is fundamental to mammalian development, but technologies to monitor expression oscillations are limited. We have developed a statistical approach called Oscope to identify and characterize the transcriptional dynamics of oscillating genes in single-cell RNA-seq data from an unsynchronized cell population. Applications to a number of data sets, include a single-cell RNA-seq data set of human embroyonic stem cells (hESCs), demonstrate advantages of the approach and also identify a potential artifact in the Fluidigm C1 platform.
Dataset viewGSE64016
PMID26301841

Samples in single H1 hESC

Displaying 191-200 of 213 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE64016GSM1562577Illumina HiSeq 2500Homo sapiensH1_Exp3.269single H1 hESC
GSE64016GSM1562578Illumina HiSeq 2500Homo sapiensH1_Exp3.270single H1 hESC
GSE64016GSM1562579Illumina HiSeq 2500Homo sapiensH1_Exp3.271single H1 hESC
GSE64016GSM1562580Illumina HiSeq 2500Homo sapiensH1_Exp3.272single H1 hESC
GSE64016GSM1562581Illumina HiSeq 2500Homo sapiensH1_Exp3.273single H1 hESC
GSE64016GSM1562582Illumina HiSeq 2500Homo sapiensH1_Exp3.274single H1 hESC
GSE64016GSM1562583Illumina HiSeq 2500Homo sapiensH1_Exp3.275single H1 hESC
GSE64016GSM1562584Illumina HiSeq 2500Homo sapiensH1_Exp3.276single H1 hESC
GSE64016GSM1562585Illumina HiSeq 2500Homo sapiensH1_Exp3.277single H1 hESC
GSE64016GSM1562586Illumina HiSeq 2500Homo sapiensH1_Exp3.278single H1 hESC

Gene rank in single H1 hESC

Displaying 17521-17530 of 17544 results.
Rank orderGene SymbolEnsembl ID
17521SIRPGENSG00000089012
17522SULT1C3ENSG00000196228
17523PRM3ENSG00000178257
17524BFSP2ENSG00000170819
17525IRX5ENSG00000176842
17526AKAP4ENSG00000147081
17527TSPY2ENSG00000168757
17528TBC1D10CENSG00000175463
17529OR10A3ENSG00000170683
17530CYP4F12ENSG00000186204