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  single H1-Fucci cell sorted from S phase of the cell cycle only

Overall DesignTotal 213 H1 single cells and 247 H1-Fucci single cells were sequenced. The 213 H1 cells were used to evaluate Oscope in identifying oscillatory genes. The H1-Fucci cells were used to confirm the cell cycle gene cluster identified by Oscope in the H1 hESCs. Normalized expected counts are provided in GSE64016_H1andFUCCI_normalized_EC.csv.gz
SummaryOscillatory gene expression is fundamental to mammalian development, but technologies to monitor expression oscillations are limited. We have developed a statistical approach called Oscope to identify and characterize the transcriptional dynamics of oscillating genes in single-cell RNA-seq data from an unsynchronized cell population. Applications to a number of data sets, include a single-cell RNA-seq data set of human embroyonic stem cells (hESCs), demonstrate advantages of the approach and also identify a potential artifact in the Fluidigm C1 platform.
Dataset viewGSE64016
PMID26301841

Samples in single H1-Fucci cell sorted from S phase of the cell cycle only

Displaying 21-30 of 80 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE64016GSM1562759Illumina HiSeq 2500Homo sapiensS_Exp1.061single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562758Illumina HiSeq 2500Homo sapiensS_Exp1.060single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562757Illumina HiSeq 2500Homo sapiensS_Exp1.059single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562756Illumina HiSeq 2500Homo sapiensS_Exp1.058single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562755Illumina HiSeq 2500Homo sapiensS_Exp1.057single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562754Illumina HiSeq 2500Homo sapiensS_Exp1.056single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562753Illumina HiSeq 2500Homo sapiensS_Exp1.055single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562752Illumina HiSeq 2500Homo sapiensS_Exp1.054single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562751Illumina HiSeq 2500Homo sapiensS_Exp1.053single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562750Illumina HiSeq 2500Homo sapiensS_Exp1.052single H1-Fucci cell sorted from S phase of the cell cycle only

Gene rank in single H1-Fucci cell sorted from S phase of the cell cycle only

Displaying 17431-17440 of 17544 results.
Rank orderGene SymbolEnsembl ID
17431CAMK2BENSG00000058404
17432IGFL2ENSG00000204866
17433NDUFA4L2ENSG00000185633
17434DMRTB1ENSG00000143006
17435BANF2ENSG00000125888
17436P2RY4ENSG00000186912
17437ZNF645ENSG00000175809
17438OTORENSG00000125879
17439PRR15LENSG00000167183
17440TARP