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  glioblastoma [None]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [None]

Displaying 21-30 of 120 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395839Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_E09glioblastoma [None]
GSE57872GSM1395841Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_E11glioblastoma [None]
GSE57872GSM1395844Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_F02glioblastoma [None]
GSE57872GSM1395593Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_A03glioblastoma [None]
GSE57872GSM1395596Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_A06glioblastoma [None]
GSE57872GSM1395601Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_A11glioblastoma [None]
GSE57872GSM1395604Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_B02glioblastoma [None]
GSE57872GSM1395863Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_G09glioblastoma [None]
GSE57872GSM1395608Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_B06glioblastoma [None]
GSE57872GSM1395870Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_H04glioblastoma [None]

Gene rank in glioblastoma [None]

Displaying 101-110 of 5942 results.
Rank orderGene SymbolEnsembl ID
101HNRNPKENSG00000165119
102SRSF3ENSG00000112081
103NONOENSG00000147140
104PRDX1ENSG00000117450
105DBIENSG00000155368
106SNORA66ENSG00000207523
107COPAENSG00000122218
108FXYD6ENSG00000137726
109MIR3652
110RHOAENSG00000067560