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  HEK293T

Overall DesignSequencing libraries from cDNA was generated using in-house produced or commercial Tn5 and in a variety of tagmentation buffers and conditions.
SummaryMassively parallel DNA sequencing of thousands of samples in a single machine-run is now possible, but the preparation of the individual sequencing libraries is expensive and time-consuming. Tagmentation-based library construction, using the Tn5 transposase, is efficient for generating sequencing libraries but currently relies on undisclosed reagents, which severely limits development of novel applications and the execution of large scale projects. Here, we present simple and robust procedures for Tn5 transposase production and optimized reaction conditions for tagmentation-based sequencing library construction. We further show how molecular crowding agents both modulate library lengths and enable efficient tagmentation from sub-picogram amounts of cDNA. Comparison of single-cell RNA-sequencing libraries generated using produced and commercial Tn5 demonstrated equal performances in terms of gene detection and library characteristics. Finally, as naked Tn5 can be annealed to any oligonucleotide of choice, for example molecular barcodes in single-cell assays or methylated oligonucleotides for bisulfite sequencing, custom Tn5 production and tagmentation enables innovation in sequencing-based applications.
Dataset viewGSE58652
PMID25079858

Samples in HEK293T

Displaying 21-30 of 42 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE58652GSM1416408Illumina HiSeq 2000Homo sapiensinhouse_low_1pg_rep2HEK293T
GSE58652GSM1416409Illumina HiSeq 2000Homo sapiensinhouse_low_1pg_rep3HEK293T
GSE58652GSM1416410Illumina HiSeq 2000Homo sapiensinhouse_low_1pg_rep4HEK293T
GSE58652GSM1416411Illumina HiSeq 2000Homo sapiensinhouse_low_500pg_rep1HEK293T
GSE58652GSM1416412Illumina HiSeq 2000Homo sapiensinhouse_low_500pg_rep2HEK293T
GSE58652GSM1416413Illumina HiSeq 2000Homo sapiensinhouse_low_500pg_rep3HEK293T
GSE58652GSM1416414Illumina HiSeq 2000Homo sapiensinhouse_low_500pg_rep4HEK293T
GSE58652GSM1416437Illumina HiSeq 2000Homo sapiensXT_0.1pg_rep1HEK293T
GSE58652GSM1416438Illumina HiSeq 2000Homo sapiensXT_0.1pg_rep2HEK293T
GSE58652GSM1416439Illumina HiSeq 2000Homo sapiensXT_0.1pg_rep3HEK293T

Gene rank in HEK293T

Displaying 19381-19390 of 19442 results.
Rank orderGene SymbolEnsembl ID
19381MMP3ENSG00000149968
19382C9ENSG00000113600
19383CX3CL1ENSG00000006210
19384GIMAP6ENSG00000133561
19385LOC100507194
19386LOC643623
19387F2ENSG00000180210
19388SPATA21ENSG00000187144
19389AFPENSG00000081051
19390SLC3A1ENSG00000138079