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  glioblastoma [None]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [None]

Displaying 21-30 of 120 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395593Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_A03glioblastoma [None]
GSE57872GSM1395596Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_A06glioblastoma [None]
GSE57872GSM1395601Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_A11glioblastoma [None]
GSE57872GSM1395604Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_B02glioblastoma [None]
GSE57872GSM1395608Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_B06glioblastoma [None]
GSE57872GSM1395615Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_C01glioblastoma [None]
GSE57872GSM1395632Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_D06glioblastoma [None]
GSE57872GSM1395635Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_D09glioblastoma [None]
GSE57872GSM1395636Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_D10glioblastoma [None]
GSE57872GSM1395639Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_E01glioblastoma [None]

Gene rank in glioblastoma [None]

Displaying 5761-5770 of 5942 results.
Rank orderGene SymbolEnsembl ID
5761SPIN3ENSG00000204271
5762PPP2R5EENSG00000154001
5763RNASE1ENSG00000129538
5764SLC8A1ENSG00000183023
5765ARMCX2ENSG00000184867
5766TFR2ENSG00000106327
5767ZNF691ENSG00000164011
5768ZNF350ENSG00000256683
5769CLEC16AENSG00000038532
5770CECR1ENSG00000093072