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  glioblastoma [None]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [None]

Displaying 31-40 of 120 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395644Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_E06glioblastoma [None]
GSE57872GSM1395646Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_E08glioblastoma [None]
GSE57872GSM1395647Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_E09glioblastoma [None]
GSE57872GSM1395652Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_F02glioblastoma [None]
GSE57872GSM1395653Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_F03glioblastoma [None]
GSE57872GSM1395654Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_F04glioblastoma [None]
GSE57872GSM1395657Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_F07glioblastoma [None]
GSE57872GSM1395664Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_G02glioblastoma [None]
GSE57872GSM1395667Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_G05glioblastoma [None]
GSE57872GSM1395676Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H02glioblastoma [None]

Gene rank in glioblastoma [None]

Displaying 61-70 of 5942 results.
Rank orderGene SymbolEnsembl ID
61LDHBENSG00000111716
62TMED10ENSG00000170348
63MIR3198-2
64SRP9ENSG00000143742
65SYT11ENSG00000132718
66MATR3ENSG00000015479
67CHI3L1ENSG00000133048
68YWHAZENSG00000164924
69TBC1D8BENSG00000133138
70PGK1ENSG00000102144