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  single H1-Fucci cell sorted from S phase of the cell cycle only

Overall DesignTotal 213 H1 single cells and 247 H1-Fucci single cells were sequenced. The 213 H1 cells were used to evaluate Oscope in identifying oscillatory genes. The H1-Fucci cells were used to confirm the cell cycle gene cluster identified by Oscope in the H1 hESCs. Normalized expected counts are provided in GSE64016_H1andFUCCI_normalized_EC.csv.gz
SummaryOscillatory gene expression is fundamental to mammalian development, but technologies to monitor expression oscillations are limited. We have developed a statistical approach called Oscope to identify and characterize the transcriptional dynamics of oscillating genes in single-cell RNA-seq data from an unsynchronized cell population. Applications to a number of data sets, include a single-cell RNA-seq data set of human embroyonic stem cells (hESCs), demonstrate advantages of the approach and also identify a potential artifact in the Fluidigm C1 platform.
Dataset viewGSE64016
PMID26301841

Samples in single H1-Fucci cell sorted from S phase of the cell cycle only

Displaying 31-40 of 80 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE64016GSM1562730Illumina HiSeq 2500Homo sapiensS_Exp1.032single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562731Illumina HiSeq 2500Homo sapiensS_Exp1.033single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562732Illumina HiSeq 2500Homo sapiensS_Exp1.034single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562733Illumina HiSeq 2500Homo sapiensS_Exp1.035single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562734Illumina HiSeq 2500Homo sapiensS_Exp1.036single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562735Illumina HiSeq 2500Homo sapiensS_Exp1.037single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562736Illumina HiSeq 2500Homo sapiensS_Exp1.038single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562737Illumina HiSeq 2500Homo sapiensS_Exp1.039single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562738Illumina HiSeq 2500Homo sapiensS_Exp1.040single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562739Illumina HiSeq 2500Homo sapiensS_Exp1.041single H1-Fucci cell sorted from S phase of the cell cycle only

Gene rank in single H1-Fucci cell sorted from S phase of the cell cycle only

Displaying 181-190 of 17544 results.
Rank orderGene SymbolEnsembl ID
181SNRPNENSG00000128739
182USP22ENSG00000124422
183MSH2ENSG00000095002
184TARSENSG00000113407
185PSMA2ENSG00000106588
186DNMT3AENSG00000119772
187SEPT2ENSG00000168385
188PRPF40AENSG00000196504
189PSMB4ENSG00000159377
190TUBA1AENSG00000167552