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  HEK293T

Overall DesignSequencing libraries from cDNA was generated using in-house produced or commercial Tn5 and in a variety of tagmentation buffers and conditions.
SummaryMassively parallel DNA sequencing of thousands of samples in a single machine-run is now possible, but the preparation of the individual sequencing libraries is expensive and time-consuming. Tagmentation-based library construction, using the Tn5 transposase, is efficient for generating sequencing libraries but currently relies on undisclosed reagents, which severely limits development of novel applications and the execution of large scale projects. Here, we present simple and robust procedures for Tn5 transposase production and optimized reaction conditions for tagmentation-based sequencing library construction. We further show how molecular crowding agents both modulate library lengths and enable efficient tagmentation from sub-picogram amounts of cDNA. Comparison of single-cell RNA-sequencing libraries generated using produced and commercial Tn5 demonstrated equal performances in terms of gene detection and library characteristics. Finally, as naked Tn5 can be annealed to any oligonucleotide of choice, for example molecular barcodes in single-cell assays or methylated oligonucleotides for bisulfite sequencing, custom Tn5 production and tagmentation enables innovation in sequencing-based applications.
Dataset viewGSE58652
PMID25079858

Samples in HEK293T

Displaying 31-40 of 42 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE58652GSM1416440Illumina HiSeq 2000Homo sapiensXT_100pg_rep1HEK293T
GSE58652GSM1416441Illumina HiSeq 2000Homo sapiensXT_100pg_rep2HEK293T
GSE58652GSM1416442Illumina HiSeq 2000Homo sapiensXT_100pg_rep3HEK293T
GSE58652GSM1416443Illumina HiSeq 2000Homo sapiensXT_10pg_rep1HEK293T
GSE58652GSM1416444Illumina HiSeq 2000Homo sapiensXT_10pg_rep2HEK293T
GSE58652GSM1416445Illumina HiSeq 2000Homo sapiensXT_10pg_rep3HEK293T
GSE58652GSM1416446Illumina HiSeq 2000Homo sapiensXT_1pg_rep1HEK293T
GSE58652GSM1416447Illumina HiSeq 2000Homo sapiensXT_1pg_rep2HEK293T
GSE58652GSM1416448Illumina HiSeq 2000Homo sapiensXT_1pg_rep3HEK293T
GSE58652GSM1416449Illumina HiSeq 2000Homo sapiensXT_500pg_rep1HEK293T

Gene rank in HEK293T

Displaying 19341-19350 of 19442 results.
Rank orderGene SymbolEnsembl ID
19341RGS18ENSG00000150681
19342MFSD6LENSG00000185156
19343DDI1ENSG00000170967
19344FAM189A2ENSG00000135063
19345APBB1IPENSG00000077420
19346APOL1ENSG00000100342
19347TTLL10ENSG00000162571
19348SLC43A3ENSG00000134802
19349ARHGEF33ENSG00000214694
19350ANKRD26P3ENSG00000237636