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  glioblastoma [Mes]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [Mes]

Displaying 41-50 of 101 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395626Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_C12glioblastoma [Mes]
GSE57872GSM1395884Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_A06glioblastoma [Mes]
GSE57872GSM1395629Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_D03glioblastoma [Mes]
GSE57872GSM1395630Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_D04glioblastoma [Mes]
GSE57872GSM1395631Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_D05glioblastoma [Mes]
GSE57872GSM1395633Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_D07glioblastoma [Mes]
GSE57872GSM1395889Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_A11glioblastoma [Mes]
GSE57872GSM1395634Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_D08glioblastoma [Mes]
GSE57872GSM1395637Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_D11glioblastoma [Mes]
GSE57872GSM1395640Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_E02glioblastoma [Mes]

Gene rank in glioblastoma [Mes]

Displaying 5771-5780 of 5942 results.
Rank orderGene SymbolEnsembl ID
5771RPE65ENSG00000116745
5772ZNF600ENSG00000189190
5773MUTYHENSG00000132781
5774CASKENSG00000147044
5775SERPINA1ENSG00000197249
5776BCORENSG00000183337
5777NUBP2ENSG00000095906
5778TUBENSG00000166402
5779ZNF16ENSG00000170631
5780PROM1ENSG00000007062