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  HEK293T

Overall DesignSequencing libraries from cDNA was generated using in-house produced or commercial Tn5 and in a variety of tagmentation buffers and conditions.
SummaryMassively parallel DNA sequencing of thousands of samples in a single machine-run is now possible, but the preparation of the individual sequencing libraries is expensive and time-consuming. Tagmentation-based library construction, using the Tn5 transposase, is efficient for generating sequencing libraries but currently relies on undisclosed reagents, which severely limits development of novel applications and the execution of large scale projects. Here, we present simple and robust procedures for Tn5 transposase production and optimized reaction conditions for tagmentation-based sequencing library construction. We further show how molecular crowding agents both modulate library lengths and enable efficient tagmentation from sub-picogram amounts of cDNA. Comparison of single-cell RNA-sequencing libraries generated using produced and commercial Tn5 demonstrated equal performances in terms of gene detection and library characteristics. Finally, as naked Tn5 can be annealed to any oligonucleotide of choice, for example molecular barcodes in single-cell assays or methylated oligonucleotides for bisulfite sequencing, custom Tn5 production and tagmentation enables innovation in sequencing-based applications.
Dataset viewGSE58652
PMID25079858

Samples in HEK293T

Displaying 41-42 of 42 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE58652GSM1416450Illumina HiSeq 2000Homo sapiensXT_500pg_rep2HEK293T
GSE58652GSM1416451Illumina HiSeq 2000Homo sapiensXT_500pg_rep3HEK293T

Gene rank in HEK293T

Displaying 171-180 of 19442 results.
Rank orderGene SymbolEnsembl ID
171ATP6V1FENSG00000128524
172SLC25A5ENSG00000005022
173H3F3BENSG00000132475
174COTL1ENSG00000103187
175ATP5EENSG00000124172
176STMN1ENSG00000117632
177MRPL20ENSG00000242485
178RPS21ENSG00000171858
179COX6B1ENSG00000126267
180PLS3ENSG00000102024