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  glioblastoma [None]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [None]

Displaying 41-50 of 120 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395685Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H11glioblastoma [None]
GSE57872GSM1395688Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A02glioblastoma [None]
GSE57872GSM1395691Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A05glioblastoma [None]
GSE57872GSM1395692Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A06glioblastoma [None]
GSE57872GSM1395696Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A10glioblastoma [None]
GSE57872GSM1395697Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A11glioblastoma [None]
GSE57872GSM1395702Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_B04glioblastoma [None]
GSE57872GSM1395706Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_B08glioblastoma [None]
GSE57872GSM1395711Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_C01glioblastoma [None]
GSE57872GSM1395714Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_C04glioblastoma [None]

Gene rank in glioblastoma [None]

Displaying 5781-5790 of 5942 results.
Rank orderGene SymbolEnsembl ID
5781RNF144BENSG00000137393
5782HMOX1ENSG00000100292
5783HIST1H1CENSG00000187837
5784GAL3ST4ENSG00000197093
5785THBS4ENSG00000113296
5786PELI2ENSG00000139946
5787HBEGFENSG00000113070
5788KBTBD7ENSG00000120696
5789CD83ENSG00000112149
5790FAM175AENSG00000163322