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  glioblastoma [None]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [None]

Displaying 41-50 of 120 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395685Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H11glioblastoma [None]
GSE57872GSM1395688Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A02glioblastoma [None]
GSE57872GSM1395691Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A05glioblastoma [None]
GSE57872GSM1395692Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A06glioblastoma [None]
GSE57872GSM1395696Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A10glioblastoma [None]
GSE57872GSM1395697Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A11glioblastoma [None]
GSE57872GSM1395702Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_B04glioblastoma [None]
GSE57872GSM1395706Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_B08glioblastoma [None]
GSE57872GSM1395711Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_C01glioblastoma [None]
GSE57872GSM1395714Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_C04glioblastoma [None]

Gene rank in glioblastoma [None]

Displaying 5841-5850 of 5942 results.
Rank orderGene SymbolEnsembl ID
5841RN7SL1ENSG00000276168
5842RAPGEF4ENSG00000091428
5843SLC7A1ENSG00000139514
5844ZNF16ENSG00000170631
5845ZNF692ENSG00000171163
5846TNFRSF11BENSG00000164761
5847CHGBENSG00000089199
5848ACSL4ENSG00000068366
5849ZNF318ENSG00000171467
5850ADCY2ENSG00000078295